rs242576541 SNP Detail

Summary

• ID
  rs242576541
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:58180735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATATTTT GCATGGCGAC
  ACTTGTAGCC CTTCAGGAGA GGAGGCCAGG GCACACAGAC GGGTTCAGCC CCCACTATAG
  CGGCAGCAGC AGGCACTGCA GAGCTGCTCC AGCACACCAC GCTGCCACCC AGTGGTTTCT
  GCTGACTTTT CCTTTCGTGC TGAAGTGTAC TGGCCAAGCC TCGTTGTTTT TTTTTGTTTT
  K
  TTTTTTTTTT CTCCTCGTCG CCCCCTCATC TGGCCATTTG GGAGCCACGC AGTGAGCCTG
  GACGTGTACC ACGGGCAATA TTGGGGGAAA AGAGCATAGC CCAGATCTTC ATTTCAGCTC
  TGCTCCATCC CCCATTTCCT GCTTCCTTCT TTTACTTCTT CCTCAAAACC AAAAAGATTC
  ATCTATAACC CCCAATTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403554890	MGP_WTSI_X_56388552	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242576541					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403554890	MGP_WTSI_X_56388552	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:58180735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22738	CpG island 22738	537 bp distal
Fgf13	fibroblast growth factor 13	within coordinates
Rr4369	regulatory region 4369	within coordinates
Rr8657	regulatory region 8657	within coordinates
Tssr163463	transcription start site region 163463	1000 bp upstream
Tssr163464	transcription start site region 163464	983 bp upstream
Tssr163465	transcription start site region 163465	955 bp upstream
Tssr163466	transcription start site region 163466	930 bp upstream
Tssr163467	transcription start site region 163467	658 bp upstream
Tssr163468	transcription start site region 163468	590 bp upstream