rs242580737 SNP Detail

Summary

• ID
  rs242580737
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32248381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACATGAA AGTAGAGCAA
  GGAGTTTCAG CCAGGTGGTG CTGTCACACG CCTTTAATCC CAGCACCCAA GAGGCAGAAG
  CAGGTGGATC TCTGTGAATT ATACATTAGC CTGCTCTATA CAGAGACACC CTGTCTAGAA
  AATAACCACC ACCATAAAAA GATTCCTAGG TTTCTATGTT AGCTACAGTC TAAACTACTA
  Y
  CTTTGTGATG CCCATCTTCC CCAGAGAGGC CCTTGGTGTC TCCTCCAGCT ACGAAGTCCT
  TTTTTGGGGG CATTTTATCT GCCAAGTCCA AATACCTATT TGAACTTAAG TGTGTGTGCT
  AGCTTTTAAT CATTTTTCTC CTTAGAAGCA CCTCAGCAGA TGCACAAGTT CACCCATCCT
  CTTTCCTCTC AGTTATCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395858314	MGP_WTSI_16_32429649	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242580737					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395858314	MGP_WTSI_16_32429649	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32248381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	858 bp proximal
Dynlt2b	dynein light chain Tctex-type 2B	464 bp downstream
Gm53948	predicted gene, 53948	299 bp upstream
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	1358 bp upstream
Rr404779	regulatory region 404779	1192 bp upstream
Rr514694	regulatory region 514694	156 bp distal
Rr514695	regulatory region 514695	579 bp proximal
Rr514696	regulatory region 514696	1106 bp proximal
Rr514697	regulatory region 514697	1165 bp proximal
Rr514698	regulatory region 514698	1697 bp proximal
Tssr137979	transcription start site region 137979	1044 bp upstream
Tssr137980	transcription start site region 137980	1332 bp upstream
Tssr137981	transcription start site region 137981	1422 bp upstream
Tssr137982	transcription start site region 137982	1460 bp upstream
Tssr137983	transcription start site region 137983	1480 bp upstream
Tssr137984	transcription start site region 137984	1529 bp upstream
Tssr137985	transcription start site region 137985	1662 bp upstream
Tssr137986	transcription start site region 137986	1727 bp upstream
Tssr140804	transcription start site region 140804	1515 bp downstream