rs242584811 SNP Detail

Summary

• ID
  rs242584811
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:109721874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGAAG GCAGCGGCCA
  CAGTACGGGG GAGGACTCGG CCTTCCAGGA ACCGGATTCG CCCCTGCCTT CTGCACGCAG
  CCCTGCCGAG GCCGAGGCCG AGCGCCGCCG TCGCTCGCCC GGCGCGGAGC CCAGCAGCCC
  GGGAGAGCTG GAGGACGACT TGCTGCTGCA GGGCGGCGGC GGAGGCGCGC AAGCGGCGGG
  T
  GGAGGCGCCG AGGGCGACTC TTGGGAGGAG GAGGGTTTCG GCTCCTCGTC GCCCGTCAAA
  TCACCTTCGA CCGCCTACTT TCTGAGCAGC CCGTTCTCGC CAGTGCGCTG CGGCGGCCCA
  GGGGATGCCT CCCCGCAGGG TTGCGGGGCT CCGCGAGCCA TGGACGACCC CTGCTCGCCG
  CAGCCCGACT ACCCGAGCAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss372699475	MGP_WTSI_7_117266181	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs242584811					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372699475	MGP_WTSI_7_117266181	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109721874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19571	CpG island 19571	within coordinates
Gm45819	predicted gene 45819	927 bp downstream
Rr400541	regulatory region 400541	594 bp downstream
Rr400542	regulatory region 400542	1213 bp upstream
Rr653190	regulatory region 653190	611 bp distal
Tssr68487	transcription start site region 68487	532 bp downstream
Tssr68488	transcription start site region 68488	372 bp downstream
Tssr68489	transcription start site region 68489	344 bp downstream
Tssr68490	transcription start site region 68490	88 bp downstream
Tssr68491	transcription start site region 68491	52 bp upstream
Tssr74249	transcription start site region 74249	1074 bp upstream
Tssr74250	transcription start site region 74250	223 bp downstream
Tssr74251	transcription start site region 74251	252 bp downstream
Tssr74252	transcription start site region 74252	334 bp downstream
Wee1	WEE 1 homolog 1 (S. pombe)	Coding-Synonymous