rs242588739 SNP Detail

Summary

• ID
  rs242588739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38056501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGTCTGT GTGTGTTATT
  TAGTAAACCA TACTTAACTC ATGTAAATTG TATAGTTATG CTTTCAACAA GGTATTTAGA
  TCTTTGTGTA GTCCCATTTT CTCAACTAAT AAAATTAGAC AATAGACTAG TTGGTTTCTA
  AAGTTTTTCA ACACTCTAAT TTCTGCTGTT TTAAGTGAAA AATGTATAAA GGTCTACTTA
  Y
  TTAGGTTTTC TGATAGCTTG TTTTATACTT TAGTTATTCA ATGTTTTATG AAAATAATTC
  CATTCAGAAA AATGCTCATG TGCATATGCA CAGATGTTCA TTACTTGCAG AAGTTACTTT
  TTTCCCTTCC CTGCCTAGGC TGTTTGCTTG TCTGTTTTAG GGGTAGGGCT CTTGATTCAT
  ACCTTCTGGT TTTGGCATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349287063	MGP_WTSI_1_38074265	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242588739					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349287063	MGP_WTSI_1_38074265	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38056501 () rs orientation: forward

Symbol	Name	Function Class
B230213L16Rik	RIKEN cDNA B230213L16 gene	495 bp downstream
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr33452	regulatory region 33452	1902 bp distal
Tssr6335	transcription start site region 6335	428 bp upstream
Tssr6336	transcription start site region 6336	445 bp upstream
Tssr6337	transcription start site region 6337	626 bp upstream
Tssr6338	transcription start site region 6338	647 bp upstream
Tssr6339	transcription start site region 6339	1559 bp upstream
Tssr6340	transcription start site region 6340	1607 bp upstream
Tssr6341	transcription start site region 6341	1648 bp upstream
Tssr6342	transcription start site region 6342	1678 bp upstream
Tssr6343	transcription start site region 6343	1695 bp upstream
Tssr6344	transcription start site region 6344	1729 bp upstream
Tssr6345	transcription start site region 6345	1748 bp upstream
Tssr6346	transcription start site region 6346	1811 bp upstream
Tssr6347	transcription start site region 6347	1841 bp upstream
Tssr6348	transcription start site region 6348	1989 bp upstream