rs242590163 SNP Detail

Summary

• ID
  rs242590163
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79415810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCTTTTG AGTGTTCAGA
  TTCAGTTTGT CTTATGTCTC TGCCTATTTT TGTAGGGACC TGTGAAATCT TAAATGACTC
  ACACACACTG TTAGAAAATC TGAAAATAAC CACTATGTAA CTCCCAATTT AGATAAACAC
  AGACGATGTG TTGAATTCTT CCTACTTAAA AAAGAAAAGA AAAGAAAAAA AGGTAAAAAA
  M
  CCTTCATTCA TTTTTTTCTC CAATATTTTT AAAATCTCAC AGATGGATTA GTAAGAGGAA
  TCACTTGTAC ACTTCCTGCT TGGCATTGCT GATAATTGGA GAAGCTATTT CAATCCTTGA
  AATTTCTTTT GTAAACAAAT GCATGTAAAT AAATCTATAA GTTTATTCAT GTCTTCGATA
  CATCCTGGTT TGTGGCAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350232840	MGP_WTSI_1_79434668	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	C	A	A	A	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242590163					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	C	A	A	A	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350232840	MGP_WTSI_1_79434668	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79415810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi462	CpG island 462	1890 bp proximal
Rr17631	regulatory region 17631	1791 bp proximal
Rr29696	regulatory region 29696	590 bp proximal
Rr29697	regulatory region 29697	1390 bp proximal
Scg2	secretogranin II	within coordinates
Tssr12433	transcription start site region 12433	1828 bp upstream
Tssr12434	transcription start site region 12434	1745 bp upstream
Tssr12435	transcription start site region 12435	1910 bp downstream
Tssr12436	transcription start site region 12436	1922 bp downstream
Tssr12437	transcription start site region 12437	1946 bp downstream