rs242591307 SNP Detail

Summary

• ID
  rs242591307
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101829275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTGGGG GGACAGTGTG
  GATCCCCATC CTATCTCCCT CTTTCCAGTG CTAAGGGTGG TTCATCGAGT CTCATCTCTT
  TTTGTCCTCT GCTGTAAGCA TGGAGGTTAC CCAGCTACCA ACATCCCACG AGCCCCACAC
  AGGAATGAAG GGTACAAAGC CAGGCAGGAG CCAACAGATA CACAGTAAAC TTGACTTTAG
  W
  TCTTGAACCT CTGAGACCTG GACTCACTGG ACCAACCGTG CAGCATAAAC CATCCTGGCG
  TCTCCAGCTT CTGCCTCTCT TTCTAGGCAC TGTCTCCCCA GGCCCAAGAG CATCCCTTGA
  GAGTTGAAGT ATATTACATT AACTGGGAGA ATTTATTGAG CGCTGACTGT GCCCCAGACT
  CTCTGCGGTG TCTTGACAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323834280	CHEV_11_101799763	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242591307					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101829275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3890	CpG island 3890	788 bp distal
Gm33662	predicted gene, 33662	464 bp upstream
Gm74450	predicted gene, 74450	within coordinates
Rpl27-ps2	ribosomal protein L27, pseudogene 2	1052 bp upstream
Rr457131	regulatory region 457131	493 bp distal
Rr457132	regulatory region 457132	374 bp distal
Tssr105164	transcription start site region 105164	1764 bp downstream