rs242592888 SNP Detail

Summary

• ID
  rs242592888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78634791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGTCTCT TTCTAATATT
  ACACTCCAGT GGCTGATTTA GTCATTTGTG TTTTGCTGGG TGAATGTTTT GAGTGGGGGG
  AGGCAGTTGT AAAATAAATG CCTATATCCT GATGTAGTGT CCAAGAGGAT CTATACAATG
  GCAAACTAAA CAACACACAC AGTCATAAAG ATTCATAAAG CTTTTTTTTT TTTTTTTTTT
  Y
  CGAGACAGGG TTTCTCTGTA TATCCCTGGC TGTCCTGGAA CTCACTTTGT AGACCAGGCT
  GGCCTCGAAC TCAGAAATCC GCCTGCCTCT GCCTCCTGAG TGCTGGGATT AGAGGTGTGC
  GCCACCACGC CCGGCTGATA AAAGATTATT TTTGAGTAAA GTTTCATCCT TTGCAAACAT
  GAAATGTGGG TATGCGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SWR/J
ss350214397	MGP_WTSI_1_78653649	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	T	C	C	C	C	T	C	C	C	T	C	C	T	T	T	C	C	T	C	C	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SWR/J
rs242592888					SNP	T	T	T	C	T	C	C	C	C	T	C	C	C	T	C	C	T	T	T	C	C	T	C	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350214397	MGP_WTSI_1_78653649	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78634791 () rs orientation: forward

Symbol	Name	Function Class
Acsl3	acyl-CoA synthetase long-chain family member 3	809 bp upstream
Cpgi461	CpG island 461	420 bp proximal
Rr17618	regulatory region 17618	191 bp distal
Rr29694	regulatory region 29694	9 bp proximal
Rr371565	regulatory region 371565	1374 bp downstream
Rr396121	regulatory region 396121	623 bp upstream
Tssr7581	transcription start site region 7581	782 bp upstream
Tssr7582	transcription start site region 7582	800 bp upstream
Tssr12428	transcription start site region 12428	1199 bp downstream
Tssr12429	transcription start site region 12429	1216 bp downstream
Utp14b	UTP14B small subunit processome component	809 bp upstream