rs242593672 SNP Detail

Summary

• ID
  rs242593672
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:177575232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCAGGAA GTGTATCTGA
  GCCCCCATCT TGGAGAGTAA GTCTTACCCC AACAGAAGGT AAAGACAGTC TGGGAGGACC
  ATAAATGAAT GAGATACTGG CCCATTGCTA GGTCCACTGT TCTTCAGGTA GTCCATAAAT
  ACATTTTGTT GCCAGTGGTT TCTTGGACCC AAGATTATTT TTTTGGAAAC AGGGCCATCG
  R
  CTTGGAGAAG GACTGAGTAT TGAGCCACTG TGTCTACCAA GAATTGAGTG GGTTTCCCCT
  CCACTCTCAG AATTACCCTG GGTTCAGGGA GGGGGTCCAA ACCCTGTCGC CCCTAATCAC
  TGTCTTCACC CAGGGCTAAC ACCTTTGATA TTTAGGAGCA ATTTTCCCAA GACCTGGGAT
  TTCCCACCCC AGGCTTCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320159126	CHEV_1_179677797	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242593672					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177575232 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr424057	regulatory region 424057			544 bp proximal
Spmip3	sperm microtubule inner protein 3			Intron
				Noncoding-Transcript-Variant