rs242594664 SNP Detail

Summary

• ID
  rs242594664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53747458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGGGATG ACCCCAGCTC
  GCATCGGGGA GAAGCGGCGA AAGGCACAGA GCTTATCCCC TAATGCTTTT CCCCTGCAGA
  GCTCTTGGGA AGGGTCAGCT CACGCGGCGA TCACGCCTGT CTCGCCGCGT GTGCGGGTCG
  TGCGGGAGCA AATGAATGGA GACAGTCGCT GGCAGGTCAC CGGGGACCGG GGCTCTGTCC
  Y
  GATCTCCGCC GCTCCGGCAC CTGATACTGA GATTAGCATA AGGGAGGTGT CCAGTGAACG
  TCGGAATGAA TGAAAAAGGC TGGGAACCCG CGGCGAGCGG GAAGCCACTT GGAAAACACC
  CACTCGAGGA GGCGTCTCCT CTAGGCCTGT GAGACGCTCG CATTTTCCCA GGACCCCTCC
  TCCCGGCCCC GGGGCCCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364963852	MGP_WTSI_5_53981355	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242594664					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364963852	MGP_WTSI_5_53981355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53747458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr367840	regulatory region 367840	1030 bp downstream
Rr611644	regulatory region 611644	1393 bp distal
Rr611645	regulatory region 611645	746 bp distal
Rr611646	regulatory region 611646	within coordinates
Rr611647	regulatory region 611647	375 bp proximal
Rr611648	regulatory region 611648	876 bp proximal
Rr611649	regulatory region 611649	1374 bp proximal
Rr611650	regulatory region 611650	1792 bp proximal
Tssr46224	transcription start site region 46224	1349 bp downstream
Tssr46225	transcription start site region 46225	1151 bp downstream
Tssr46226	transcription start site region 46226	672 bp downstream
Tssr46227	transcription start site region 46227	223 bp upstream
Tssr46228	transcription start site region 46228	237 bp upstream
Tssr46229	transcription start site region 46229	306 bp upstream
Tssr46230	transcription start site region 46230	337 bp upstream
Tssr46231	transcription start site region 46231	540 bp upstream
Tssr46232	transcription start site region 46232	557 bp upstream
Tssr46233	transcription start site region 46233	605 bp upstream
Tssr46234	transcription start site region 46234	943 bp upstream
Tssr46235	transcription start site region 46235	1117 bp upstream
Tssr46236	transcription start site region 46236	1132 bp upstream
Tssr46237	transcription start site region 46237	1284 bp upstream
Tssr46238	transcription start site region 46238	1350 bp upstream
Tssr46239	transcription start site region 46239	1413 bp upstream
Tssr46240	transcription start site region 46240	1480 bp upstream
Tssr46241	transcription start site region 46241	1801 bp upstream
Tssr51023	transcription start site region 51023	851 bp upstream
Tssr51024	transcription start site region 51024	62 bp downstream
Tssr51025	transcription start site region 51025	456 bp downstream