rs242598239 SNP Detail

Summary

• ID
  rs242598239
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164117034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATAAAAAG ATGAGTAGAC
  TCTCTAGTGC GAAGGAGGCA TGGTTTTGGT AACTGTGCAC AAGCCTTGTT CACACAGAAC
  CAAGGGCAGG TCAGTTGCCA TTTTCTTCCA CTCAAAATCA CTCTTCTCTT TCCACCAGGG
  TCAAATTCAT TCTGGATTAG GAACCTTTGT CAGTGCAGTT TGTCTGCAGA ATCACAGAAG
  W
  GTCCTGACCT TGTTCTGTTC TGACTACTAT CTCAATGTGA GCTTTGAGGT TGCTATAATG
  ATATTACATC CACGGAGACC CTGGAGCTTT AATTTTGGAG AAAGTAAAGA TAGATCTGGT
  TGACAATAGG TATGTTGCAG ATATGGAACA GGAAACTAAC TCCTCATCCA CAGGGTTTGT
  TTGTTTGTTG TTTGTTTGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356428045	MGP_WTSI_2_164100850	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242598239					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356428045	MGP_WTSI_2_164100850	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164117034 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	1998 bp proximal
Svs4	seminal vesicle secretory protein 4	842 bp downstream
Tssr21549	transcription start site region 21549	838 bp upstream
Tssr21550	transcription start site region 21550	944 bp upstream
Tssr21551	transcription start site region 21551	1988 bp upstream
Tssr27409	transcription start site region 27409	864 bp downstream
Tssr27410	transcription start site region 27410	887 bp downstream
Tssr27411	transcription start site region 27411	924 bp downstream
Tssr27412	transcription start site region 27412	962 bp downstream
Tssr27413	transcription start site region 27413	969 bp downstream
Tssr27414	transcription start site region 27414	987 bp downstream
Tssr27415	transcription start site region 27415	1003 bp downstream
Tssr27416	transcription start site region 27416	1963 bp downstream
Tssr27417	transcription start site region 27417	1972 bp downstream