rs242601287 SNP Detail

Summary

• ID
  rs242601287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23718831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGTAGG CTGAGGTAAT
  TCTTAGGCAA CTGCTTTGTC TTCCTCACGC AGAGAAATAT TGGATGTAGC ATAAACATAG
  ATTTACACGT TGCACAAAAC TTTTGGTCTT GCAGTCCTCT ACATCTTCGT ATTGCTCCGG
  AGAGGCAGCA GACATTCGGG GTTGGGAGAA AATACAAAGG GTCTTACGGA AATTGTTAGG
  Y
  AAGTCTTTAC AAAGTCGCAA GATTCAGGAT ACTTGACCTG TGGTTCCTGT TACATTACTG
  CTTGCTTTGT GTCACTTTAA ACACTCCTGG AGCAAAGACG TAGTTCGGCT TGAGTCAAGG
  AAAAAGGACC TAGGTGCATA TTTTACATAT AGCAAACCTG GTCTCTTTTT CTTCCTCCTT
  GGTTGCCACC TCTTGATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324289725	CHEV_13_23626530	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242601287					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23718831 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	496 bp proximal
Gm55640	predicted gene, 55640	407 bp upstream
Gm60769	predicted gene, 60769	958 bp upstream
H2ac10	H2A clustered histone 10	357 bp downstream
H3c8	H3 clustered histone 8	757 bp upstream
Rr403647	regulatory region 403647	719 bp downstream
Rr403648	regulatory region 403648	475 bp upstream
Tssr4007	transcription start site region 4007	956 bp upstream
Tssr118828	transcription start site region 118828	779 bp downstream
Tssr118829	transcription start site region 118829	750 bp upstream
Tssr121712	transcription start site region 121712	1000 bp upstream
Tssr121713	transcription start site region 121713	504 bp downstream