rs242614569 SNP Detail

Summary

• ID
  rs242614569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173917250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCACCCGG GGCTCAAGAG
  CCTGACCCTA CGCGCGGCTC CCACGCCTGC CTCCTGGCAC CCGGGAGAGG CAGGGGACCC
  TCAAGTCAGG CCAAACTGTT CCCAATCTGA TCCCAAAGCT GAGAGCAAGA TTGAGGGCAA
  GACACCCCAT AAAGTCGCTC TGCAGATATT GGTCTGTCAT CCAGGCTTGC CGGTGACCCC
  R
  GCCTCCGGAG CTGCTGTTCA CTGAGTGCGG CAGCTGCAGC CCTGGGGGGC CCTGGGAGAC
  GCCCCCACCC CCCAAGCCAG GGTAGCAACG AGTGGGATGC ATGGTTCCAG AGACTGGGAG
  GCGACCAGAA ACCCCAGCTC GAGGAAACGT GGGCATAACC TCAACACAAA GTACTTTTTG
  GGGGAGTGGG GCTGAGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356682615	MGP_WTSI_2_173900958	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242614569					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356682615	MGP_WTSI_2_173900958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173917250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	153 bp distal
Cpgi12852	CpG island 12852	690 bp proximal
Gm75644	predicted gene, 75644	503 bp upstream
Rr397552	regulatory region 397552	1920 bp upstream
Rr572060	regulatory region 572060	1739 bp distal
Rr572061	regulatory region 572061	514 bp distal
Rr572062	regulatory region 572062	13 bp distal
Rr572063	regulatory region 572063	789 bp proximal
Rr572064	regulatory region 572064	975 bp proximal
Rr572065	regulatory region 572065	1476 bp proximal
Stx16	syntaxin 16	851 bp upstream
Tssr22077	transcription start site region 22077	839 bp upstream
Tssr22078	transcription start site region 22078	1588 bp upstream