rs242618953 SNP Detail

Summary

• ID
  rs242618953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25593626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCAAGC GAGTCAATTC
  TTGCGGGGTT TCCTTCCTAC ACAAAGGTGC TATGTACTTT TTTTTTTTTT TTTTTTTAAC
  GAGATGGTCA TTTTTACCGT AAAATGGAGG CTGCTCTAAA CCATCAGCTC AGGTTAAATT
  TGCTGAATGA GTGCTGCCCA AAACTCCCGC TGGGGTGATC GCTAAGCAGC AGTGCCGTGG
  Y
  GCTTCGGATT TCACGGTATG GTTCCTATTA AAACCCATAA AACGGCTCCT GTGAGGCCTG
  CCTGACTCAC CCAGTCACAG ACCCACAAAT ATTTTCTGAG CACTACTGTA TTGGCTGCCT
  GGCAGGCAGA GAAGCCAAAG GCCTCAGTTT CCAACAAAGA CAAGGTAGGA ACCTGTGTGT
  ACCCTTCTGG GCCGCAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373995078	MGP_WTSI_8_26214082	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242618953					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373995078	MGP_WTSI_8_26214082	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25593626 () rs orientation: forward

Symbol	Name	Function Class
5830408C22Rik	RIKEN cDNA 5830408C22 gene	within coordinates
Cpgi20179	CpG island 20179	438 bp distal
Gm45745	predicted gene 45745	within coordinates
Gm63713	predicted gene, 63713	within coordinates
Plekha2	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	1234 bp upstream
Rr368503	regulatory region 368503	291 bp downstream
Rr661039	regulatory region 661039	1868 bp distal
Rr661040	regulatory region 661040	1636 bp distal
Rr661041	regulatory region 661041	1777 bp distal
Rr661042	regulatory region 661042	1272 bp distal
Rr661043	regulatory region 661043	744 bp distal
Rr661044	regulatory region 661044	871 bp distal
Rr661045	regulatory region 661045	257 bp proximal
Rr661046	regulatory region 661046	865 bp proximal
Rr661047	regulatory region 661047	1069 bp proximal
Rr661048	regulatory region 661048	1209 bp proximal
Tssr2524	transcription start site region 2524	1983 bp downstream
Tssr76669	transcription start site region 76669	1724 bp downstream
Tssr76670	transcription start site region 76670	1657 bp downstream
Tssr76671	transcription start site region 76671	121 bp downstream
Tssr80678	transcription start site region 80678	1897 bp upstream
Tssr80679	transcription start site region 80679	1818 bp upstream
Tssr80680	transcription start site region 80680	1441 bp upstream
Tssr80681	transcription start site region 80681	1416 bp upstream
Tssr80682	transcription start site region 80682	1222 bp upstream
Tssr80683	transcription start site region 80683	1040 bp upstream
Tssr80684	transcription start site region 80684	580 bp upstream
Tssr80685	transcription start site region 80685	1051 bp downstream
Tssr80686	transcription start site region 80686	1090 bp downstream
Tssr80687	transcription start site region 80687	1181 bp downstream