rs242626427 SNP Detail

Summary

• ID
  rs242626427
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19875642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAAGGGC AAGCCTTGGC
  TACACATCAA GGCAGTCTCT ACACAACAAC AAAAATAGAA ACTAAAAGCC CACCCTGTCA
  ACCAAAACCC CCTACTTAGA CTAGGAAATG AATTCTTGTC TTTTTGTTTG CTATAGTACA
  AAGTCCCTCC TCAAGACTCA AGGCAATGTA CCAAATACTA AGCCAGTATA AAAAAATTTT
  W
  AAAATTCATA CTTCCGATAC TTAATGGCAT GGAATAAATG TTCCCATTTC AAAATTAAAG
  AACAGAAGGA TATAAAAGAA ATATTGAAAC TCCAAAAGAA AAGTACCAAT CATCGTTTCC
  CCATATTCAG AATAATTTGA ACTCCAATGA CTTTTGGCAT TCCTGCCTCT CCAGATCTGT
  GTCATTCAGC ACCTGTCATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360789910	MGP_WTSI_4_19802789	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242626427					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360789910	MGP_WTSI_4_19802789	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19875642 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0d2	ATPase, H+ transporting, lysosomal V0 subunit D2	1196 bp downstream
Gm68467	predicted gene, 68467	329 bp upstream
Tssr41030	transcription start site region 41030	1487 bp downstream
Tssr41031	transcription start site region 41031	1552 bp downstream
Tssr41032	transcription start site region 41032	1569 bp downstream
Tssr41033	transcription start site region 41033	1608 bp downstream
Tssr41034	transcription start site region 41034	1649 bp downstream
Tssr41035	transcription start site region 41035	1684 bp downstream
Tssr41036	transcription start site region 41036	1711 bp downstream
Tssr41037	transcription start site region 41037	1833 bp downstream
Tssr41038	transcription start site region 41038	1899 bp downstream
Tssr41039	transcription start site region 41039	1911 bp downstream
Tssr41040	transcription start site region 41040	1953 bp downstream
Tssr41041	transcription start site region 41041	1980 bp downstream
Tssr41042	transcription start site region 41042	1987 bp downstream