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rs242633580 SNP Detail
Summary
  • ID
    rs242633580
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:44385880 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCATACCACG CATGCTAACT
TTTCTCTCGA GACAATCTAC TTGCTCTGTA TCAAATGAAG ATAATTTCTC CATCCCATCT
AGCACAACCT GCAGTGAACT TCATCAGCGG GGACTTGCTC TATCCCTAGT TTGAGGCAGC
AGTCTTGAAG CTAGGAACAA GGAGGGATGT ATTCAGGAGG AAGGATCAGT ATTTCAGAAA
R
CAGAAAGGTG GCCTGGGCTT TGGAGGGTGG ACAGACACAG GCCAGTGGTT GGTCAACTAT
TTGCCTGAAG GTGGTGATGA CAGAGAAGAA ACAAAGCTGG ACACCATGCA AACAAACAGG
GACTGAGCAC CATGCTCACC CTAGCATCAA AACAGCATGT TCCTTGGCTT TGATCCTCTC
TGTATAGAAT GTTCAAATTT                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552124 MGP_WTSI_19_44471931 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242633580 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552124 MGP_WTSI_19_44471931 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44385880 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 175 bp distal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 271 bp distal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 158 bp distal
Rr548238 regulatory region 548238 360 bp distal
Rr548239 regulatory region 548239 1273 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 1077 bp upstream
Tssr156606 transcription start site region 156606 1015 bp downstream
Tssr156607 transcription start site region 156607 694 bp downstream
Tssr156608 transcription start site region 156608 279 bp downstream
Tssr156609 transcription start site region 156609 83 bp downstream
Tssr159455 transcription start site region 159455 1802 bp upstream
Tssr159456 transcription start site region 159456 1683 bp upstream
Tssr159457 transcription start site region 159457 1654 bp upstream
Tssr159458 transcription start site region 159458 1620 bp upstream
Tssr159459 transcription start site region 159459 1528 bp upstream
Tssr159460 transcription start site region 159460 1492 bp upstream
Tssr159461 transcription start site region 159461 1431 bp upstream
Tssr159462 transcription start site region 159462 1399 bp upstream
Tssr159463 transcription start site region 159463 1360 bp upstream
Tssr159464 transcription start site region 159464 1330 bp upstream
Tssr159465 transcription start site region 159465 1310 bp upstream
Tssr159466 transcription start site region 159466 1292 bp upstream
Tssr159467 transcription start site region 159467 1228 bp upstream
Tssr159468 transcription start site region 159468 982 bp upstream
Tssr159469 transcription start site region 159469 917 bp upstream
Tssr159470 transcription start site region 159470 903 bp upstream
Tssr159471 transcription start site region 159471 870 bp upstream
Tssr159472 transcription start site region 159472 844 bp upstream
Tssr159473 transcription start site region 159473 825 bp upstream
Tssr159474 transcription start site region 159474 803 bp upstream
Tssr159475 transcription start site region 159475 756 bp upstream
Tssr159476 transcription start site region 159476 738 bp upstream
Tssr159477 transcription start site region 159477 729 bp upstream
Tssr159478 transcription start site region 159478 708 bp upstream
Tssr159479 transcription start site region 159479 690 bp upstream
Tssr159480 transcription start site region 159480 658 bp upstream
Tssr159481 transcription start site region 159481 599 bp upstream
Tssr159482 transcription start site region 159482 511 bp upstream
Tssr159483 transcription start site region 159483 413 bp upstream
Tssr159484 transcription start site region 159484 386 bp upstream
Tssr159485 transcription start site region 159485 268 bp upstream
Tssr159486 transcription start site region 159486 254 bp upstream
Tssr159487 transcription start site region 159487 172 bp upstream
Tssr159488 transcription start site region 159488 129 bp upstream
Tssr159489 transcription start site region 159489 69 bp upstream
Tssr159490 transcription start site region 159490 3 bp upstream
Tssr159491 transcription start site region 159491 25 bp downstream
Tssr159492 transcription start site region 159492 76 bp downstream
Tssr159493 transcription start site region 159493 102 bp downstream
Tssr159494 transcription start site region 159494 122 bp downstream
Tssr159495 transcription start site region 159495 240 bp downstream
Tssr159496 transcription start site region 159496 310 bp downstream
Tssr159497 transcription start site region 159497 323 bp downstream
Tssr159498 transcription start site region 159498 335 bp downstream
Tssr159499 transcription start site region 159499 365 bp downstream
Tssr159500 transcription start site region 159500 396 bp downstream
Tssr159501 transcription start site region 159501 411 bp downstream
Tssr159502 transcription start site region 159502 447 bp downstream
Tssr159503 transcription start site region 159503 460 bp downstream
Tssr159504 transcription start site region 159504 539 bp downstream
Tssr159505 transcription start site region 159505 652 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory