rs242643396 SNP Detail

Summary

• ID
  rs242643396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92469927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAGCTCT TAATTCCTTT
  AAAAATATCT CTGTAAAGAT TTTTATTTGC CGTCTGAGAT TATGGGTGTA TGTCATGGGG
  GCCTGTGTAC ACCTGTGCAA TGCTTGCAGA GGCCAGAAGA GAGAAATGGG TTCCCTGGAG
  CTGGAGTCAC AGGTGGCCAC AAGGCTCACG CACACGTGGG GGTGGGTGCT GGGAATGGAA
  Y
  TCTGGCTCCC TCTCCAGCCC TGATCTTTCC ATTTCACCAC TCCTAGCCTG ATGTGGCAAT
  CCATACAATC ATACACTGGG ATTTCTGCAA TGAGGGAGGG AAGGTGGCAA GGAAATTCAT
  ATTCACCTAA GATAAACTTG CTAAAGGATT TGGCAGCTCT TTTGTTGACT CCTAGGGAGC
  TTGTCCTGAT CAAGAATGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365880907	MGP_WTSI_5_92751094	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242643396					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365880907	MGP_WTSI_5_92751094	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92469927 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Tssr47287	transcription start site region 47287	916 bp upstream
Tssr47288	transcription start site region 47288	1699 bp upstream
Tssr47289	transcription start site region 47289	1716 bp upstream
Tssr47290	transcription start site region 47290	1728 bp upstream
Tssr47291	transcription start site region 47291	1769 bp upstream
Tssr51864	transcription start site region 51864	664 bp downstream
Tssr51865	transcription start site region 51865	742 bp downstream
Tssr51866	transcription start site region 51866	1031 bp downstream
Tssr51867	transcription start site region 51867	1623 bp downstream
Tssr51868	transcription start site region 51868	1679 bp downstream
Tssr51869	transcription start site region 51869	1725 bp downstream
Tssr51870	transcription start site region 51870	1767 bp downstream
Tssr51871	transcription start site region 51871	1801 bp downstream