rs242645194 SNP Detail

Summary

• ID
  rs242645194
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150870320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAACATTAC AATGTTCTTC CAAGTCGCAA
  TCATTATATA CATTATAGCC GGATTAACAG ATTTCAGAAG GTAAGCGAAG AAAGTCATTC
  ATGCGCTAAC CATTCTTTGT TCCCCTTTAA TAAATACGCC CCCCTCCCCC AGGAAAGGGG
  Y
  TATTGTCTGG ATGCAAGCAT TCGAAGTACA GCACTTGGGC AGCTTTAAAC TGGGTTTGAG
  TGTGTATGAG ACCACCCTCT AGCATGGGGC AGCCTGAGAA AGGGCCAGCT CCCACCAGCC
  TTTTATAATC TCCAACTGTC TTCTCTTTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320052989	CHEV_1_152841699	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242645194					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150870320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	776 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	1134 bp upstream
Rr420192	regulatory region 420192	1930 bp distal
Rr420193	regulatory region 420193	1028 bp distal
Rr420194	regulatory region 420194	689 bp distal
Rr420195	regulatory region 420195	575 bp distal
Rr420196	regulatory region 420196	within coordinates
Tssr14167	transcription start site region 14167	1414 bp upstream
Tssr14168	transcription start site region 14168	1120 bp upstream