rs242651678 SNP Detail

Summary

• ID
  rs242651678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4003875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTTCCGGG AAACACTCAG GGAAGTAGAG
  GCAGAAAGTA GTGCTCATGG AGTATGAGTG TTGGGAGTAT GTGACACCCA GGATACAAGA
  TGGACAGCAG GAAGTCACTC CGGAAAGAGG CCACAGCCAG GTGACACACT CCTTGCTCTT
  R
  TTTGGGAGCT TGGTGTGTTC TCTCATGGCA CAAAAGGAAA AGATTTTTGG ATGCCAATCA
  GAAAAGCTGA ACTCTCAAAG GAGCCCTGGA ATCCCCCAAA CAAAACAAAG CAAATAGACA
  AGCAAACAGC GTCTAACTGG GGAGTGAAGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323873009	CHEV_12_3953875	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242651678					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4003875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4369	CpG island 4369	767 bp proximal
Pomc	pro-opiomelanocortin-alpha	1076 bp upstream
Rr366691	regulatory region 366691	572 bp upstream
Rr462232	regulatory region 462232	1491 bp proximal
Tssr112541	transcription start site region 112541	1068 bp upstream