rs242656680 SNP Detail

Summary

• ID
  rs242656680
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33598346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTACAA CAGCAACTTG
  AGCAACAAGT ACCTTTCAGA ATGGCACGTG TAGGGTGCTT TGGAAGCCCA GAAGATCTCA
  GACTCCATTA AAAATGTGAC TGTCATTGTA TCCCCCAGGA GTGTTTGGGG GCAGAGAGCA
  GGGAAATATG CAGAAAGGGG CGGGTGGCTA AGAACAAAGA GAAGAAAAGC AATTCAGCAA
  W
  TTTCCCTGAC ATTGGTCAAT GTTTTCCTGT CAGAAAATAC TGGAAAGAAA ACGTGGAGAG
  TGATAGTCTG ACTGTGGGAG AGGAGGCCCT GAGGAAACCG GTTCTCTAGT TTGAACCCCT
  GAAAGACTGG TCAAAGGGAC TTCACAGGAG ATCTTTGCCA TCTTTCCCCC ACTCACTACC
  AAACCAAAGA TTACCAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400215659	MGP_WTSI_18_33624947	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242656680					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400215659	MGP_WTSI_18_33624947	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33598346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9808	CpG island 9808	793 bp distal
Gm10549	predicted gene 10549	within coordinates
Nrep	neuronal regeneration related protein	1264 bp upstream
Rr352671	regulatory region 352671	345 bp distal
Tssr152761	transcription start site region 152761	1850 bp upstream
Tssr152762	transcription start site region 152762	1820 bp upstream
Tssr152763	transcription start site region 152763	1663 bp upstream
Tssr152764	transcription start site region 152764	1635 bp upstream
Tssr152765	transcription start site region 152765	1491 bp upstream
Tssr152766	transcription start site region 152766	1437 bp upstream
Tssr152767	transcription start site region 152767	1389 bp upstream
Tssr152768	transcription start site region 152768	1229 bp upstream
Tssr152769	transcription start site region 152769	907 bp upstream