rs242657518 SNP Detail

Summary

• ID
  rs242657518
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:80565109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGCAGC GTTTAGATTT
  TAGGGGAGAA ATATTCCCTC TGGACTGAAA AATACTTTTT CTTTTTTGTT TCAGATTTTG
  ATGATTATTA TTTCAATTAA AATGTATAAT TAAAGTATTT AATTAAACCA CCACACAGAT
  ATTGATGTGT AGCCTGACAC TGAGGCTTTG CACTGGCAGT TATGGCTGCC TTGGAATTCA
  W
  ACATAAAGTT TTATTCTGAG AATTCCAAGT GTTGACAGGA AATGCTAAAA ATGAGATAGG
  GGAGTGCTAG GAAAATGCAG AAAACAAACT GCACCCCATG CATGGCTGTT GGTGAGCCAC
  AGGGCAGCTT CTGAATGGCC CTGACTGGAG TTACTCCTCA GCAAACTACA CAGACCTGTG
  GCTTGAATTA GCATGGGCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323024896	CHEV_9_80576663	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242657518					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:80565109 () rs orientation: forward

Symbol	Name	Function Class
Rr683772	regulatory region 683772	808 bp distal
Rr683773	regulatory region 683773	within coordinates
Tssr86335	transcription start site region 86335	1143 bp downstream