rs242658439 SNP Detail

Summary

• ID
  rs242658439
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140906600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGATACA GCACGGAGCA
  GCTCATGTCA CAATATAAAG CAAGGCTGGT TTCTGCATCG TTACCTTTGC AAGGTTGCCT
  GCCTTGGATG ACTCTCTTGC CCCTCTCATG TCACACTTGA ACTGGCCTTT GAGACAGACA
  GGTCTACCAG CAGTAATGCT GCTGACCATA CCTGGGGCAC CTCTAGAACA GAACTCACAT
  S
  TGACCCATCT GTGCTCTCAG CTCCCAGGAA GCAGCAGGAG AGGACAAGGC AGGTGGTAGG
  TACTGAGAAA GTTCCAAAGG GTAAAACAGA CAAAGAACAG AGAGGCACAC TCACACAAGG
  GAGACACGTC TGTATACAGT GCAGAGCAAG GCTAGAGGAG TGAGAGTGTG CTGTGCGTGT
  GCATGTGTGT GTGCAAGATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373429744	MGP_WTSI_7_148512586	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242658439					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373429744	MGP_WTSI_7_148512586	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140906600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19932	CpG island 19932	within coordinates
Deaf1	DEAF1, transcription factor	within coordinates
Rr166953	regulatory region 166953	within coordinates
Rr400715	regulatory region 400715	1166 bp upstream
Tmem80	transmembrane protein 80	1446 bp upstream
Tssr69944	transcription start site region 69944	1153 bp upstream
Tssr69945	transcription start site region 69945	1435 bp upstream
Tssr69946	transcription start site region 69946	1455 bp upstream
Tssr69947	transcription start site region 69947	1518 bp upstream
Tssr75631	transcription start site region 75631	823 bp downstream
Tssr75632	transcription start site region 75632	870 bp downstream
Tssr75633	transcription start site region 75633	962 bp downstream
Tssr75634	transcription start site region 75634	988 bp downstream
Tssr75635	transcription start site region 75635	1013 bp downstream
Tssr75636	transcription start site region 75636	1051 bp downstream
Tssr75637	transcription start site region 75637	1494 bp downstream