rs242659260 SNP Detail

Summary

• ID
  rs242659260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117720675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTCAAG AGGCTGAAGC
  AGGAGGTTCA AGGCCAGCAT GGGCTACATA GCAGTTCTGG GTCATCCTGG ATAAATGTGT
  CTCAAAAATG CAAAACAAAA CAATGTGGTA TGCAGTCTGA TGATCCCAAA TGTTGAAATG
  TGCAGGTGGG AGGGTCACAA GTTCAAGGTC ACCTTGGCTA GGTAGGGCTC TGGGCTAGCC
  R
  AGGTTACATG AAATCCTGTC TAAAACAAAC TGAAGGTTCC AGAAGGAGAG AGCATGCTTG
  AGTCCGTATC TATGACCTAT ACTGAGCTCT GGTTTCTGCC TCCCACTGAC CAGTTCTCTC
  TCATGCTTGG ATTCATCTGC CTGGCTTCTG ACCTCTGCTC CCACTGTTAG ACTGCTAACA
  CAGCATTCTG GTTGGCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384886437	MGP_WTSI_11_117691163	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242659260					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384886437	MGP_WTSI_11_117691163	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117720675 () rs orientation: forward

Symbol	Name	Function Class
Afmid	arylformamidase	within coordinates
Gm20708	predicted gene 20708	within coordinates
Gm74061	predicted gene, 74061	419 bp upstream
Gm74064	predicted gene, 74064	837 bp upstream
Rr232228	regulatory region 232228	526 bp proximal
Rr246230	regulatory region 246230	1274 bp distal
Rr246232	regulatory region 246232	1925 bp proximal
Rr403160	regulatory region 403160	1252 bp downstream
Tssr106089	transcription start site region 106089	467 bp downstream
Tssr106090	transcription start site region 106090	339 bp downstream
Tssr106091	transcription start site region 106091	799 bp upstream
Tssr112048	transcription start site region 112048	1560 bp upstream