rs242662537 SNP Detail

Summary

• ID
  rs242662537
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110011495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGACCAGG GCCCTTGCTC
  TCTACCCATT CTTTTCTTCA GAAGTAAGTT GGAAGGTCAC TGGAACTGTG GGAACAGAGA
  GTTACAGATG TCAGAGTATT CCCAGAAAGG TGGATTTGGA ATACAGTGTA AGGACCCTGG
  GGGTGGTAGG GGTGGTAGGT GGGTGGGGAG TAATTTGATC AGAAACTTTG TTATTCCTTT
  M
  TGAATAGGAT CAAATCCTGA GAAAGAACTT AATGGCTGCT AAGGCAGCTA GCTTGTTACA
  GATAGGGCCT CATCACTCCA TGACATTACT CATTAGAACT GTGTAGGAGT TCAAATCCCA
  GGACTGCCAC CCATTTGTTA GATGAATCTT GGGTGAATCA TTTTATCGTC ATTTCTCAGT
  TTCTTCTCTG TAAAATAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255199	CHEV_4_109826903	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242662537					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110011495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	1513 bp distal
Gm33070	predicted gene, 33070	within coordinates
Rr84118	regulatory region 84118	1895 bp distal
Rr91513	regulatory region 91513	706 bp proximal
Rr91514	regulatory region 91514	1506 bp proximal
Tssr38368	transcription start site region 38368	1624 bp downstream