rs242665377 SNP Detail

Summary

• ID
  rs242665377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:60227462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAACGTCT TCCACAAAAT
  TCAGGTCTTC CAGAAAAATA TCCAGGTCTT CCAACCAGTC TATGTCTTCC AGAAAAATCC
  AGGTCTTCCA GCTCATCTAT GTCTTCCATC AGTTCAAGTC TTCCAGATAC CCATGTCTTC
  CATTAAATCT AGGTCTTCCA ATAGATCTAT GTCTTCCTGA AAATTAACGT CTTCCAATAA
  Y
  GTCCAAGTCT TCCAGCCAAG ATATGTCTTC CTGAAGATTA ATGTCTTCCT GAAGATTGAC
  ATCTTCCAGC AGAAAATCTT TGTCTTCCAT TAAATCCACA TCTTCCAGAA AATCCATGTC
  TTCCCAAAAA TCCACATCTT CCAGGAAATC AACGTCTTCC CCAAAATCCA TGTCTTCCTG
  AAAATCCACC GTCTTCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403586331	MGP_WTSI_X_58437031	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242665377					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403586331	MGP_WTSI_X_58437031	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60227462 () rs orientation: forward

Symbol	Name	Function Class
Cdr1	cerebellar degeneration related antigen 1	Noncoding-Transcript-Variant
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Tssr5627	transcription start site region 5627	150 bp upstream
Tssr161077	transcription start site region 161077	597 bp downstream
Tssr161078	transcription start site region 161078	573 bp downstream
Tssr161079	transcription start site region 161079	541 bp downstream
Tssr161080	transcription start site region 161080	522 bp downstream
Tssr161081	transcription start site region 161081	390 bp downstream
Tssr161082	transcription start site region 161082	370 bp downstream
Tssr161083	transcription start site region 161083	293 bp downstream
Tssr161084	transcription start site region 161084	56 bp downstream
Tssr161085	transcription start site region 161085	39 bp downstream
Tssr161086	transcription start site region 161086	12 bp upstream
Tssr161087	transcription start site region 161087	34 bp upstream
Tssr161088	transcription start site region 161088	60 bp upstream
Tssr161089	transcription start site region 161089	83 bp upstream
Tssr161090	transcription start site region 161090	1552 bp upstream
Tssr161091	transcription start site region 161091	1661 bp upstream
Tssr161092	transcription start site region 161092	1775 bp upstream
Tssr161093	transcription start site region 161093	1820 bp upstream
Tssr161094	transcription start site region 161094	1844 bp upstream
Tssr161095	transcription start site region 161095	1885 bp upstream
Tssr161096	transcription start site region 161096	1924 bp upstream
Tssr161097	transcription start site region 161097	1992 bp upstream