rs242670848 SNP Detail

Summary

• ID
  rs242670848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23891584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTACATAT ATGGGCAATG
  GTGACACATG CCTTTAATCC CAGCACTTGG GAGGCAGAAG CAGGCAGATC TCTGTAAATT
  TGAGGCCAAA CTGGTCTACA GAGCAAGTTC CAGGACAGCC AAGGCCACAC AGAGAAACCC
  TGTCTCAAAA TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TACGAGCAAG
  Y
  ACAGTGGTTC TTGGGGCTGA GGGTAACTGC TCATGGTAGA CCATGCTCTT TTCTTCCTTT
  TTAAGATTTA CTTTACTGAT TTTAATTATT TGTATTTTGT ATAAGTGTGT GAGGGAAGTA
  TATACAAGTA CGTCCACAGG GGCCAGAGGA TTGGCTCCCC TGTAGCTGGA ATTAACAGGC
  AATTACAAGC TTTGGAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397840147	MGP_WTSI_17_23809577	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242670848					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397840147	MGP_WTSI_17_23809577	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23891584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8682	CpG island 8682	771 bp proximal
Hcfc1r1	host cell factor C1 regulator 1 (XPO1-dependent)	986 bp upstream
Rr329687	regulatory region 329687	1784 bp distal
Rr329688	regulatory region 329688	184 bp distal
Rr339270	regulatory region 339270	216 bp proximal
Rr405075	regulatory region 405075	834 bp upstream
Thoc6	THO complex 6	within coordinates
Tssr142940	transcription start site region 142940	971 bp upstream
Tssr142941	transcription start site region 142941	1288 bp upstream
Tssr142942	transcription start site region 142942	1380 bp upstream
Tssr146630	transcription start site region 146630	1818 bp upstream
Tssr146631	transcription start site region 146631	1737 bp upstream
Tssr146632	transcription start site region 146632	1697 bp upstream
Tssr146633	transcription start site region 146633	1669 bp upstream
Tssr146634	transcription start site region 146634	1666 bp upstream
Tssr146635	transcription start site region 146635	947 bp downstream
Tssr146636	transcription start site region 146636	1215 bp downstream