rs242675774 SNP Detail

Summary

• ID
  rs242675774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57882864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTATCTTT TTAAATTTGT GCTGAATAAT
  TTCAATAAAA CTTCAAAAGT CCCAACAATT AATGCACTAG AAATGTAGAG TTTCAGTTAT
  CCCGCTATTC TCAAATCCTA TTGAATTTAT CATTTGATGT Gctttcttcc ttccttcctt
  Y
  ctttctttct ttctttcttt ctttctttct ttctttcttt tttAAAAGAT AATGACTTTA
  TACATAAAAA TGTTTTATAG TATTTCATGA ATGAAATGTA AGGTAATTTT CATATTTGGG
  TTTGAATAAA CATTTATTTT AAAATTCATT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321551268	CHEV_5_58116761	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242675774					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57882864 () rs orientation: forward

Symbol	Name	Function Class
Gm42635	predicted gene 42635	within coordinates
Pcdh7	protocadherin 7	within coordinates
Rr125228	regulatory region 125228	863 bp distal
Rr125229	regulatory region 125229	63 bp distal
Rr125230	regulatory region 125230	336 bp proximal
Tssr46296	transcription start site region 46296	1770 bp upstream