rs242687157 SNP Detail

Summary

• ID
  rs242687157
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115832952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTATGAA AAAACTCTAA
  GCACCACTAA GAGATCAAAG CTACAGTGAG ATATCCTCTC ACTCCTGTTA AAATAGTGAG
  TGACTTGTAA TAGCAAACAC ACACACACAC ACACACACAC ACACACACAC ACCCAAACAA
  AATAAATGTT AATAAGGAGG AGGCAAGAAT ACTTTAATCT TAGTACTTTA GTGGTAATCT
  W
  ATTAATATGG CCATTGTGAA ATATATTAAA GCTTCCCTCA AACGAGCTAG AAATAGAGCT
  GCCACCAGGC ATTCTTCTCC TGTCATTGCA TGGGTAACTA AAGGAATGAA ATCAGTGTAT
  TGAAGAGGTG TAGCTGGTCT GTGCTACTTT GTAGGCTCCT TTTTCTTCTA CCCTTCGCCA
  CCCTTTATCC ACCCCTTCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320894095	CHEV_3_115742221	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242687157					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115832952 () rs orientation: forward

Symbol	Name	Function Class
Rr583646	regulatory region 583646	1661 bp proximal