rs242688693 SNP Detail

Summary

• ID
  rs242688693
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20363041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGCTCT AGGGAGAGGC
  TGCTTGGCCA CCTTGGGGCT TTTTTGGGAA CGCTCCTGTC TGTTCCCATT TCCCTCGCAG
  GGTTTCAGGT TCTTTGCTCC TATCCTCGGA GAGGTCAACT TCGGCTGCAG AGTCTGTGGC
  GGCTTCGAGC CGGGGACCCC TGAGAGCTCT GCGGCCCCGG AGTGATGGCT CTCCCTGCGT
  G
  GACCTCTCCA ACTTGTTCCG GAAGCCCGGC GGGGGCAGCT GTGGCTTCTG AGCCAACATA
  TAGAGCAGAT CCAGGGACCC CAAGCTGCTT AGGCAGGGGT GCCCATCCCA TCTTGGGAGG
  CCTGGCAGTG CCTACTACTT GCCACAGAGC AGCGCTGTAG AGGGATGTGG AGAATGGTCT
  CTTTGAGGTC CAAAAGGTCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	SEA/GnJ	SPRET/EiJ	ZALENDE/EiJ
ss385295201	MGP_WTSI_12_20318895	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	SEA/GnJ	SPRET/EiJ	ZALENDE/EiJ
rs242688693					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385295201	MGP_WTSI_12_20318895	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20363041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4468	CpG island 4468	292 bp distal
Gm49697	predicted gene, 49697	400 bp downstream
Gm61293	predicted gene, 61293	within coordinates
Rr463625	regulatory region 463625	671 bp distal
Tssr112921	transcription start site region 112921	777 bp downstream