rs242690640 SNP Detail

Summary

• ID
  rs242690640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102694526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGGCCC GTTTCATTAT
  TTATTTGCCC CACCCCAGAA GAGTTTTTCT GTTTAGTCCC TGGTTGTCCT GGAACTCACT
  TTATAGACCA GGCTGCTTGC TGGCCTTGAA TTCAGAGATC TGCCTGTCTC TACCTCCTGG
  GTGCTAGGAT TAAAGACATG CAACACCAGG CCTGGCAAAA ACTTTTGTCT TTTTTTTTCC
  Y
  TTTTTGTTTT TGTGACATGG CATCATTGAC CCTGGCTGTC CTAGAACTCA TAGTGTAGAT
  CAAACTAGCC TCGAACCCAC AGCTACACTT GCCTGTCTCC AGAATTCTGG GATTAAAGGC
  GTACATTACC ACACTTTTTT TTTTTTTTTT TTTTTTTGGT TTTTCGAGAC AGGATTTCTC
  TGTATAGCCC TGGCTGTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ
ss404208723	MGP_WTSI_X_100846259	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ
rs242690640					SNP	T	T	T	T	T	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404208723	MGP_WTSI_X_100846259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102694526 () rs orientation: forward

Symbol	Name	Function Class
Rr8948	regulatory region 8948	1875 bp proximal