rs242694564 SNP Detail

Summary

• ID
  rs242694564
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59038039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACCCTA AGACACAAGC
  ACCAGGAGGC CACTCTGATT CCTCTTTCTC TCTTTTGAAA TTAGAGTGTG ACTTACCATT
  GCGTCCCCGT CCCCATCCGT AGCCCAGGCA TCAGTGTGTC TGGAGGACAG CAGGGACTCC
  CTTACATGAA CTCCTTCACG TCTGGCTTCA GCTCTGCTGG GGTGGCGGCC TTCATGCTCT
  K
  TATTTGTTTT CTTTCCTAAG CATTTTAGTT ATTGAGCTGC CTTTGCTCCG AGGGTTGCGT
  CATAACCCAG CTGCACTTGT CCCCTTCACA GGATCAGATA ACTCCTTTTA ACCCCATCTC
  TGCTACTGCA CACTGCTATT CTGCATCAGC CTGAGAGCTT GCTTAAAAGA GGAACTCCCA
  ATTCCTAGTC CGTGAGCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358113065	MGP_WTSI_3_58934540	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242694564					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358113065	MGP_WTSI_3_58934540	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59038039 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Rr577320	regulatory region 577320	7 bp distal
Rr577321	regulatory region 577321	within coordinates
Rr577322	regulatory region 577322	398 bp proximal
Rr577323	regulatory region 577323	699 bp proximal
Rr577324	regulatory region 577324	1387 bp proximal
Tssr29228	transcription start site region 29228	1247 bp upstream
Tssr29229	transcription start site region 29229	1677 bp upstream
Tssr33381	transcription start site region 33381	75 bp upstream
Tssr33382	transcription start site region 33382	15 bp upstream
Tssr33383	transcription start site region 33383	within coordinates
Tssr33384	transcription start site region 33384	11 bp downstream
Tssr33385	transcription start site region 33385	28 bp downstream
Tssr33386	transcription start site region 33386	62 bp downstream
Tssr33387	transcription start site region 33387	132 bp downstream
Tssr33388	transcription start site region 33388	444 bp downstream
Tssr33389	transcription start site region 33389	465 bp downstream
Tssr33390	transcription start site region 33390	504 bp downstream
Tssr33391	transcription start site region 33391	609 bp downstream