rs242700870 SNP Detail

Summary

• ID
  rs242700870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30352963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGAGGA AGCACGCCCC
  GTCAGGGTTG AGACAATCCC ACTCTAACCT TCAGATCTTA CCTTAAGGGT TTTTGTTCAT
  TTGGAGATGT TATTCATCTT GCTGGGTTGT TTTTTCCCCC CTACCTCTTT GAGACAGGGG
  TCCTACTGTG TAGCTGTAGC TGGCCTGAAC CTTGTTAGGT AGACCAGCCT GATCTGGAAT
  Y
  CACAGAGATC CTCCACATCC ACACCGTTCT ACAGGAGGGA CTTGAGTGTT AACGATGAAG
  TTTGCCCTTA GTGTGAAGTG GCAGAAAACA CTGGTGGGGC TGCAGAATCA GCAGTGGGGG
  CCAAGTGAGT CTCAGTCAGA CAGAAGTGAT TGAGGATTCA GCCACTCAGA GGTCACTGGT
  GACCTGACCA AGGAATCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325130487	CHEV_16_30534231	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242700870					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30352963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8161	CpG island 8161	1821 bp distal
Gm60148	predicted gene, 60148	701 bp downstream
Rr514265	regulatory region 514265	1788 bp distal
Rr514266	regulatory region 514266	1956 bp distal
Rr514267	regulatory region 514267	985 bp proximal
Rr514268	regulatory region 514268	1529 bp proximal
Tmem44	transmembrane protein 44	within coordinates
Tssr137879	transcription start site region 137879	1921 bp upstream