rs242701383 SNP Detail

Summary

• ID
  rs242701383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66055698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTCCTG TCTGCTGGGT
  TTTGCACTTT GTAGACAGCC CTAGACCTTC AGAGGCCTTC TCTGAGATTT GCTACTCCAT
  GGGAAGTTTC TCCTTGTGGA ACTTTTCTTC TGGCATAGCT TCTGAGCAGC CTCCCTGCAT
  CTCACATTCC TCCCCACCCC CCACCCCACC CCCCTTTGTT CTTTTTGACA CTAGGGACAG
  Y
  CCAGGGCCCT GTACATGCTA GGTGGGCACT CTATCCTGAG CTGCAGCTGG GCTTCTGGAA
  GTTCATTGCT CCAAGTAACA CCTTCACGTG CTGTGCTCTG ACCTTGCTGG GCCTTTCTGG
  ACCATCATTT ATTAACTTTT TTCCTACCTG TATATCTAAC ATTCTGCCTG AAGTAGAATT
  TATTTGTTTT TAAACTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325658627	CHEV_18_66082281	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242701383					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66055698 () rs orientation: forward

Symbol	Name	Function Class
Gm50118	predicted gene, 50118	259 bp downstream
Gm50119	predicted gene, 50119	1429 bp downstream
Gm58551	predicted gene, 58551	944 bp upstream
Rr346799	regulatory region 346799	98 bp distal
Rr346800	regulatory region 346800	1703 bp proximal
Rr353052	regulatory region 353052	297 bp distal
Rr393825	regulatory region 393825	1586 bp upstream