rs242725455 SNP Detail

Summary

• ID
  rs242725455
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129157569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCAAACAG GAAAGTCAGT CTCCAGATGG
  CGCCAGTGTG GCTCCTGACC TTGAAATGCG TTTCCCAATG AGATTTTGTT AGGCCCTGAG
  CCAACCAAGC GTGTGTGTAT GTACAGAAAG GAGGAGCTAC AGGATTAGCT AAATACTGAA
  R
  CCTCCCCACG TATTTGTGCC TCTCAGCTTT CAAGTTTCAA TCCTGTAGTG GAAACTCAGC
  TCCTCAGCTC TGAGATGTGT GTCACAAAGG CTTCCCTACC TATGCTTAGT CCCACAGGCA
  GCCCGCAGGA GGTAGAAGTG GGTAAGTATT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321948714	CHEV_6_129130624	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242725455					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129157569 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	9 bp upstream
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	241 bp downstream
Rr368193	regulatory region 368193	within coordinates
Rr639386	regulatory region 639386	1120 bp distal
Rr639387	regulatory region 639387	within coordinates
Rr639388	regulatory region 639388	114 bp distal
Rr639389	regulatory region 639389	20 bp proximal
Rr639390	regulatory region 639390	1038 bp proximal
Rr639391	regulatory region 639391	1885 bp proximal
Tssr59096	transcription start site region 59096	7 bp upstream
Tssr59097	transcription start site region 59097	33 bp upstream
Tssr59098	transcription start site region 59098	311 bp upstream
Tssr59099	transcription start site region 59099	345 bp upstream
Tssr59100	transcription start site region 59100	369 bp upstream
Tssr59101	transcription start site region 59101	662 bp upstream
Tssr59102	transcription start site region 59102	737 bp upstream
Tssr59103	transcription start site region 59103	1246 bp upstream
Tssr59104	transcription start site region 59104	1316 bp upstream