rs242725691 SNP Detail

Summary

• ID
  rs242725691
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:46923177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATGGCTC TAGTATTTAA
  CCTTTTAAAA GATTATCTTA AAGCTTTGGG GTATCTTTAA GATTTTTTAA AATGACGTTT
  GAAGAAGGGT TACATGCGCA CATGGTAACT CACAGTCCTG AGGATTGAGA ATTGCACTTC
  AGGCTTTGTG ACAGGCATGG GCTTTAACCC AGTGAGCCAT CCTACTGGCC TTGCATTGGC
  M
  GTTGGTAGCC CTTAAAAGGT TTTCCCAAGG GATTTGTCAA GTCTACAGAG CCAAGGCTGA
  GCAGGGCAGA CAAGCCTTTA AAACTTGGCA GGTGGACACC GTCCTTGAGC AACGACTAAG
  TCTGCTTTTC ACTTGAACCA CACAGGGGCC TGGGTTGTCC AGAGATGCCT CATGGCCAGG
  ATATTGCGGA AGTCCTGTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374534965	MGP_WTSI_8_47555494	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242725691					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374534965	MGP_WTSI_8_47555494	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:46923177 () rs orientation: forward

Symbol	Name	Function Class
Acsl1	acyl-CoA synthetase long-chain family member 1	1037 bp upstream
Cpgi20317	CpG island 20317	488 bp proximal
Gm45244	predicted gene 45244	1251 bp downstream
Gm64268	predicted gene, 64268	within coordinates
Rr186591	regulatory region 186591	223 bp proximal
Rr191786	regulatory region 191786	1280 bp distal
Rr368530	regulatory region 368530	416 bp upstream
Tssr2561	transcription start site region 2561	1571 bp upstream
Tssr77199	transcription start site region 77199	908 bp upstream
Tssr77200	transcription start site region 77200	941 bp upstream
Tssr77201	transcription start site region 77201	1029 bp upstream
Tssr77202	transcription start site region 77202	1553 bp upstream
Tssr77203	transcription start site region 77203	1579 bp upstream
Tssr77204	transcription start site region 77204	1747 bp upstream
Tssr77205	transcription start site region 77205	1796 bp upstream
Tssr81204	transcription start site region 81204	1466 bp downstream
Tssr81205	transcription start site region 81205	1499 bp downstream