rs242727656 SNP Detail

Summary

• ID
  rs242727656
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103226030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTCCTGC TAATTGCTGT TATTACCAGC
  ATGTATCTCG TTGTTTATGA GCTTTTTTCA CTTGGTACTC CAGATTGGCC TTAGGCCTTA
  AACTGGTTTT GTTTGTTTGT CTGTTTTCTT TCAATTCTGA TGGAAAATAG GTTATAGACT
  M
  TAGATCCTGG CATTTATCTG TTTGCATTAC TTAACAAATA ACAGAAGCAG CTGAACTGTC
  AGTTCACATT TTAGTCTTAT TAAATAAAGG Ttgtgtgtgt gtgtgtgtgt gtgtgtgtgt
  atgtatgGCT CAGAGGCCAA AGATTTGGCC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323160942	CHEV_9_103251161	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242727656					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103226030 () rs orientation: forward

Symbol	Name	Function Class
Rr202394	regulatory region 202394	114 bp proximal
Rr207098	regulatory region 207098	831 bp distal
Topbp1	topoisomerase (DNA) II binding protein 1	within coordinates
Tssr91191	transcription start site region 91191	1107 bp upstream