rs242742178 SNP Detail

Summary

• ID
  rs242742178
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61927514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTAGTGT TGTGAAATAA
  CGCAGATCCT CGTTCTACAC AGGGCATGAC TGGAGTGGGT ATAATTCTGC GATATTGCTA
  TTAATTAAAA AAAGTTAAAA TCTTCTATAC AGAGGTATTT TGCATGTATG ATGTCTCTGC
  ACCACCTGTG TGCCTGGTGC CCAGGGAGGC TAGAAGAAAG TGCTGGCTCT ACTGGGACTT
  W
  AATTATAGCT GCCTGTGAGC TACTTTGCAT GCAGATGCTG GGAACTGAAC CTGGGTCCTC
  TGCAGGAGGA GCGAGTGCTC TTAACTGTGG AGCCATCTCT CCAGTTCCCG GTTGCTGTTG
  TTCCTAGCAG TTCTTTGTTT TCCCATTAAC CTTTACAGCT GTGTTGAACA GCAGCACCTT
  CTAGCTCCTG TGAAACTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325645780	CHEV_18_61954097	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242742178					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61927514 () rs orientation: forward

Symbol	Name	Function Class
Gm35919	predicted gene, 35919	410 bp downstream
Rr346544	regulatory region 346544	1314 bp distal
Rr346545	regulatory region 346545	114 bp distal
Rr351728	regulatory region 351728	1369 bp distal
Rr356351	regulatory region 356351	306 bp distal