rs242747336 SNP Detail

Summary

• ID
  rs242747336
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172154579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA GTTCAATTCC CAGCAACCAC
  M
  TGGTGGCTTA CAACAATCTG TAATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320124230	CHEV_1_174257143	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242747336					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172154579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	57 bp distal
Gm70847	predicted gene, 70847	86 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	Intron
Rr423524	regulatory region 423524	1632 bp distal
Rr423526	regulatory region 423526	1896 bp distal
Rr423527	regulatory region 423527	722 bp distal
Rr423528	regulatory region 423528	1094 bp distal
Rr423529	regulatory region 423529	679 bp distal
Rr423530	regulatory region 423530	152 bp distal
Rr423531	regulatory region 423531	1206 bp proximal
Tssr15210	transcription start site region 15210	787 bp upstream
Tssr15211	transcription start site region 15211	774 bp upstream
Tssr15212	transcription start site region 15212	757 bp upstream