rs242759750 SNP Detail

Summary

• ID
  rs242759750
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:92275996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTGTCC ACTCGCCCTG
  CTGGAGTCCC CAAGAGGTGA TGCTATGGAT GCGCTCATGA GGTGAGTATC TGGCAGGCTC
  TGTTCTAAGC CAGACACTCC TGTTAGGTGT TCAGGTGGAT TTTAAAAATT TATTTCAATT
  AATTAATCAA GCATGGTTTT GTGTGTGTGC GTGTGTGCGT GGTCCGCCTC TCCCTCCTTC
  Y
  CCCCTTTCCC CCCCCCCCCC GCCCCCGCCC CATGCTGTGG TGCACAGGTG GAGATCAAAA
  GACGTCTTTT TCTCCTTCTC CGTGTGAGTT CTGGAGCTTG AGCCGGGGAC ATGAGGTGTG
  ACAAGTGTCT CCCTTGCTCA GCCATCTAGG TGGTTCCCAG GCTAGAATGC TCCCGGTGGT
  ATCTGGGAAT ATGCCATCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SWR/J	WSB/EiJ
ss397348610	MGP_WTSI_16_92479353	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	C	C	C	C	T	T	C	T	T	C	C	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SWR/J	WSB/EiJ
rs242759750					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	C	C	C	C	T	T	C	T	T	C	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397348610	MGP_WTSI_16_92479353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:92275996 () rs orientation: forward

Symbol	Name	Function Class
2410124H12Rik	RIKEN cDNA 2410124H12 gene	within coordinates
Cpgi8471	CpG island 8471	154 bp distal
Rr319727	regulatory region 319727	396 bp distal
Rr325587	regulatory region 325587	within coordinates