rs242766564 SNP Detail

Summary

• ID
  rs242766564
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32733407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGTGCTC AGATAAGTCA
  CTTGGCTGAG TCTACGGTAG GTGGGGCGCG CTCACCAGTT CAGGGGCAGT GACTGGAAGT
  TTGTTGCAAC ATCGGTAAGC CTAACCAGCC AGCAGCAACA GGAGATACCC TTTTGCCCCG
  CGAGTACAGA TCTAGAAAGG GTTCACCTCA TTAAGCGAAG GAGATGCGTC AATCCCCCCC
  M
  CCCCCGCCCC GCGCCTCCCC CTAGGGCCCG GCCTCTTCTC CCACGGTTGG GAACGCGCGG
  TGTGGGCAGA TCCAGAACAG GAGTCTCGTG TCCCGGCCTT CTGGCTAGCT CTATGGGTTA
  CAAGCGAAAG GGAGGAACAG CTTGGGGACT CTCCGCGTCA GCGTGCACAA ACCGGCGGCG
  GCCAGCAGAG AGGGGTGGCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss402294738	MGP_WTSI_19_32830497	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs242766564					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402294738	MGP_WTSI_19_32830497	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32733407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10762	CpG island 10762	30 bp proximal
Gm36566	predicted gene, 36566	within coordinates
Gm56634	predicted gene, 56634	within coordinates
Gm56643	predicted gene, 56643	542 bp downstream
Gm58496	predicted gene, 58496	1546 bp upstream
Gm58497	predicted gene, 58497	1697 bp upstream
Pten	phosphatase and tensin homolog	1570 bp upstream
Rr370485	regulatory region 370485	1373 bp downstream
Rr370486	regulatory region 370486	369 bp upstream
Rr405924	regulatory region 405924	207 bp downstream
Rr546562	regulatory region 546562	within coordinates
Rr546563	regulatory region 546563	79 bp proximal
Rr546564	regulatory region 546564	1032 bp proximal
Rr546565	regulatory region 546565	1396 bp proximal
Tssr5485	transcription start site region 5485	1477 bp upstream
Tssr5486	transcription start site region 5486	1673 bp upstream
Tssr5487	transcription start site region 5487	1719 bp upstream
Tssr155991	transcription start site region 155991	1086 bp downstream
Tssr155992	transcription start site region 155992	1569 bp upstream
Tssr155993	transcription start site region 155993	1597 bp upstream
Tssr155994	transcription start site region 155994	1640 bp upstream
Tssr158898	transcription start site region 158898	402 bp downstream
Tssr158899	transcription start site region 158899	1315 bp downstream
Tssr158900	transcription start site region 158900	1362 bp downstream