rs242769054 SNP Detail

Summary

• ID
  rs242769054
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152388907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGCCTGG TCCTGCTGTG AGGCCCTTGC
  AGATTTGGTG TGGTTTGCTG TCCTCAGAGC TCCTACTCTG AGATGTAGAA GTCTTAGTCT
  GCCATTCATG AGCACAGAGT CATGGGTGGA GAATCCTGAG TGTCTCAGCT CACACCCAGC
  A
  CTTATAAAGG CGTGCTGTGC TGCGAGGCTG AGGATCGTGT ACCGCGCCTT CCCTGCCAGC
  TCCAGCAGAA TCCAGATCAG CCTACATAGT GCTCTGTGCC GCAGCCAGGT CCTCTCAGAC
  TTGAGAAAAC CCTTTTCCTT CTCCCCTGTT                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434100	CHEV_4_151678559	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242769054					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152388907 () rs orientation: forward

Symbol	Name	Function Class
Gm70210	predicted gene, 70210	within coordinates
Icmt	isoprenylcysteine carboxyl methyltransferase	within coordinates
Rr605836	regulatory region 605836	879 bp distal
Rr605837	regulatory region 605837	245 bp proximal
Tssr44828	transcription start site region 44828	813 bp downstream
Tssr44829	transcription start site region 44829	821 bp downstream