rs242771601 SNP Detail

Summary

• ID
  rs242771601
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:71225312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTATGG GCTAAATTGT
  GTTCCTCTCC ACAAATTTAG ATGTTAAAGC CTATACCCCA TAGTGCATTT ATTGAGATGA
  TTCAGTTAAA ATAAAGTCAT GTAGGTGAGC CTTTATTACA CTGATGTCTT TATGAAAAGA
  GGAGTTAAGA CATTCACACA CACACACACT CACAAGCACA CTCACACACT CTCACACACA
  M
  ATAAAAACAC ATACCAACTC ACAAATACAC AAGTGCACAC ACACACACAT ACACACACTC
  ACAAGCACAC TCACACACTC TCACACACGC ATAAACACAC ACACCAACTC ACAAATACAC
  AAGTGCATGC ACACACACAC ACACATACAA ACACTCACAA GCACACTCAC ACATTCTCAC
  ACACACACAT AAACACACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325676437	CHEV_18_71251895	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242771601					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:71225312 () rs orientation: forward

Symbol	Name	Function Class
Rr393876	regulatory region 393876	1469 bp upstream