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rs242778552 SNP Detail
Summary
  • ID
    rs242778552
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr11:115168921 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACACATGTTT TCTACACAAG
    AACAGGACCT GAAGAAGGGT GAATGCTTAA TGTGCACATG ATCCTGGTTT CGATTACACC
    ACAAAAAATA TAATTAAAAT AAGGGCAGGA CCCATTGTCA CCTCTAACCA GACAAGCCCA
    GTGCTTCTCT GAGAGTCCTT CTCCTTCTTG GAAGACTAAC CTGTCATCCT CACAACATCT
    S
    ATTCTTGTTT ATTCTTGTTG AAGATTGAAC CCAGGGACTT ACAAAATTGC TCTACGTTTT
    AACTGCCCCC TGCCTCGCCC CGCCCCGCCC CGCCCCTAGC TGAATCTTCT ATTCCATAAT
    TCAGGTACAA AGCTAGCCTG GGCTGTATAC AGAGTGGCAC CTGATCTCAC AAAACAGTAT
    GCCACTTGTT TTGTGAGAGG                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss323862218 CHEV_11_115139409 CHEVERUD SCREENING_POP f SNP G C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs242778552 SNP G C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:115168921 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi4117 CpG island 4117 634 bp distal
Fads6 fatty acid desaturase domain family, member 6 1527 bp downstream
Fdxr ferredoxin reductase 1045 bp upstream
Gm74405 predicted gene, 74405 within coordinates
Rr231868 regulatory region 231868 1680 bp proximal
Rr246090 regulatory region 246090 within coordinates
Rr403113 regulatory region 403113 758 bp downstream
Tssr105852 transcription start site region 105852 666 bp downstream
Tssr111738 transcription start site region 111738 1189 bp upstream
Tssr111739 transcription start site region 111739 1152 bp upstream
Tssr111740 transcription start site region 111740 1123 bp upstream
Tssr111741 transcription start site region 111741 1111 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory

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