rs242782803 SNP Detail

Summary

• ID
  rs242782803
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103284262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGCCTT TCCAGATCTG
  GGGGCTTTTC TTCCTCTGTC ATAGTCTTGC TATTTCCTTG TGATAAGTCT TCAAGAGTGG
  GATGCCCAGT AAAGAGAGTG TGCACTCTTC TCACCTATGG CCCCTAGCTG GGACAGGCCA
  TCCCTCTGTA ATTATAACTT AGTTTTTCTT ATGTCTGTGA GGAATCATCA GATTATGGCC
  R
  CTGTAACACC TCCTCTCATC AGCCCTACAT CTATAAGGGA GCTCTACACA ACACAACAAA
  GGAAGTTTAA GTGAGGTCAT TGGGGAGGTG TTGAAATGGT GGAAATTCCA TGGTTGAAAC
  AAAAGTGAAA GGGACAGACC TGGAGGGAGT GACTGTGTAT AAAGGCACAC GTCCACTAAA
  GGCCCCCAGC CAGCAACTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392295878	MGP_WTSI_14_103446043	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242782803					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392295878	MGP_WTSI_14_103446043	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103284262 () rs orientation: forward

Symbol	Name	Function Class
Acod1	aconitate decarboxylase 1	186 bp upstream
Gm41235	predicted gene, 41235	within coordinates
Rr496962	regulatory region 496962	1867 bp proximal
Tssr126971	transcription start site region 126971	181 bp upstream
Tssr130073	transcription start site region 130073	1 bp downstream
Tssr130074	transcription start site region 130074	1537 bp downstream
Tssr130075	transcription start site region 130075	1582 bp downstream
Tssr130076	transcription start site region 130076	1599 bp downstream
Tssr130077	transcription start site region 130077	1874 bp downstream
Tssr130078	transcription start site region 130078	1888 bp downstream
Tssr130079	transcription start site region 130079	1913 bp downstream