rs242790069 SNP Detail

Summary

• ID
  rs242790069
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34099490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATCTATA ACTTCTGTTA
  CAGGGATTTG ATGCCTTCTG ACCTCTCCAG ACACATGGCC AATAGACACA GGGCCAATAG
  ACATACATGT AAGACAAAAC ATTCACACAA TAAAAGTGAA TAAAGACTTA AAAACAAATT
  CATTTATATA CACAAAACAC ACATCACAAA AACTCATTAG TCCAGTGAGA TTCAGATGGT
  W
  CAGGCATATA TAAAAGCAAC CCTGTTCATT TGGGTCAGGG AAGAATTTCA TTGTTGTATA
  TGTTATTTCC CAGTTATAAA TCTTTGGTTT TATCTGTCAG TCGGTTTGAC ATTACATTGT
  TTTCTTGTTA CCTATACAGC CAAATGGACG GACTGTTGAA GTACCCGAGG ATGAAGTTGT
  TAGAAATCCC CGAAGTATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324918815	CHEV_15_34029099	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242790069					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34099490 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	within coordinates
Tssr131017	transcription start site region 131017	164 bp upstream
Tssr133963	transcription start site region 133963	172 bp downstream