rs242792620 SNP Detail

Summary

• ID
  rs242792620
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71149415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTCCCCA GTCAGCTCAA
  ACCACCGCCT CCAGAGCGCA CGCCCGCCCA TCCCCCACCC GCCAAGGCCA AGTCCCAAGG
  TCAGGGCGGA GCCTCGCGCG CTCCGCCAAG CTCCGTACGG CCCCGGGGAG AGGCAGGCCT
  GGCGCCGGGG GCTGGCTGGC GTTGGGCCAG CACTAGCTGG CTCAGTCGTT TGGCGGGGGG
  C
  GGGGGAGGGG GTGCTGGCTG GGATATGGCT CGCGAAGCGC AAACCCCACG TGTGTGGTGA
  GGGGAGAGTC CACTCTATCT TTCTGGATGG TCACTTGCCT ACAAAAGGGG ATAAAACCTG
  GGTGTGTGGC TCTCTGAGGC AACAACTGGT CAAGGCTCGG GCGGGGGTTT GGGGGGAGGG
  GGGAGAACCC TCTGAGGCCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	SPRET/EiJ
ss375104802	MGP_WTSI_8_73220664	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	SPRET/EiJ
rs242792620					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375104802	MGP_WTSI_8_73220664	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71149415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20485	CpG island 20485	1085 bp distal
Cpgi20486	CpG island 20486	within coordinates
Gm64347	predicted gene, 64347	within coordinates
Gm64349	predicted gene, 64349	1728 bp upstream
Rr368548	regulatory region 368548	1036 bp downstream
Rr368549	regulatory region 368549	1531 bp upstream
Rr368550	regulatory region 368550	1894 bp upstream
Rr400910	regulatory region 400910	1185 bp downstream
Rr664888	regulatory region 664888	within coordinates
Rr664889	regulatory region 664889	1238 bp proximal
Rr664890	regulatory region 664890	1739 bp proximal
Rr664891	regulatory region 664891	1893 bp proximal
Tssr77799	transcription start site region 77799	1761 bp upstream
Tssr81647	transcription start site region 81647	1552 bp downstream
Tssr81648	transcription start site region 81648	1569 bp downstream