rs242805973 SNP Detail

Summary

• ID
  rs242805973
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7280901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCACCA GATATATGGA
  CATTCTAGGG CAGCAAAAAG ATTTCCTAGG GGAAAATGTC CTAGAGGAAC TGCCCCAGCA
  GAATCTACCT AAAAATTCCT CAGACGTTAT TTCTTCTCCC AAGGATTCCT TTCCCATCTC
  CCCTCTTCTT CACTGTCCAC ATCATTTCTC CAACAGCCTG GCTTCTGCTC CGCCAGTACG
  S
  AGTTGCCCAG TTCCCCCAAA CCCCTCTACT TGCTCTTGCT GGGACATTCC AACTTCTTTT
  CCTCCTTCTT GTCTACATGT ATGCTCGACC CACTACTGGA TACCCTCTTC AGAACGGGAT
  CATTAATTAA TTTTATTGAA GTTGATAACT TTACAGTAAT CCTCCCACCA ACAAAACAAA
  GAAGAAACAT TTCTTAAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325887792	CHEV_X_6991788	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242805973					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7280901 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Rr689600	regulatory region 689600	665 bp proximal
Rr689601	regulatory region 689601	1643 bp proximal
Tssr5584	transcription start site region 5584	1915 bp upstream
Tssr162781	transcription start site region 162781	1921 bp upstream
Tssr162782	transcription start site region 162782	1890 bp upstream
Tssr162783	transcription start site region 162783	1874 bp upstream