rs242808277 SNP Detail

Summary

• ID
  rs242808277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122554287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTCATGC AAAACACAGG
  TCACCTCCCC TGACTTTCTG CATGGGTTTG TTGGGCTATG GCCTTCACCC ACTGGCCAAT
  CTCCCCGCCC CCTCTTTTAT TTGATTGGTT GTTTGTGACA GAGTCTGGAT GGGTAGTCCA
  ATGGCTGGCC TCCAACTCAT GATCCTCCTG TCTCAGCCTC TTGAGTACTG AGATCAGAGG
  R
  TGTGCTACCT GCTTTATATG AACGCTTTTG CAAAAACAAA TCATGATACA CAACATGGCT
  TTCAAGCTAG AAGTGCGTGA CTAAAGTCAA GAAACTGTGC TCAAAACCTG AAGAGATTCT
  GCAGCACGAA GCAGCCAGAA AGGGGCAGGA ACAGGACCTA AGACAGAGCA AACTGAAGAG
  AGAGAAGACC AAGGCTGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369908824	MGP_WTSI_6_122527346	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242808277					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369908824	MGP_WTSI_6_122527346	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122554287 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	464 bp downstream
Tssr1999	transcription start site region 1999	860 bp downstream
Tssr58682	transcription start site region 58682	467 bp upstream
Tssr58683	transcription start site region 58683	543 bp upstream
Tssr58684	transcription start site region 58684	1079 bp upstream
Tssr62861	transcription start site region 62861	578 bp downstream
Tssr62862	transcription start site region 62862	634 bp downstream
Tssr62863	transcription start site region 62863	663 bp downstream
Tssr62864	transcription start site region 62864	682 bp downstream
Tssr62865	transcription start site region 62865	723 bp downstream
Tssr62866	transcription start site region 62866	849 bp downstream
Tssr62867	transcription start site region 62867	935 bp downstream
Tssr62868	transcription start site region 62868	1123 bp downstream
Tssr62869	transcription start site region 62869	1335 bp downstream