rs242809969 SNP Detail

Summary

• ID
  rs242809969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157406124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATAGCATA TCCTGTGCCC
  ATCCCTAAGC CAGGAGGCTA CTACTGGTAA CTCCAGGGCT TTCCAGATGA TCTTGGTAAA
  ACCTTTTTCT TCCATCTATT ATCCAGCAGT GATGAGTGTA GGTGGAGTCT TCAAGGCGCC
  CTGGTGACCC TGAGAATGTG AATGTCTACT ACCCACTTTC TTCTCCCACT CCACACCCTT
  Y
  TGTCCTGACA GCAAACTAAA CCCTCCAGAG GAGGCAGGAA TGTGTTCGTG CCCTTTCTTT
  GTGTCAAACC TGCAAGCCTG ATACAAAACC ACCTTGTTTA TACAATGCTT CCACAAGCTA
  TGCATTAAAA CATTTTATTC TCACATAAAG CAATGGGATG TGTCTTTATT GCAAAGTCCT
  TAGTACACAG AACTAAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356262086	MGP_WTSI_2_157389940	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	C	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242809969					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	C	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356262086	MGP_WTSI_2_157389940	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157406124 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12577	CpG island 12577	1466 bp proximal
Gm56190	predicted gene, 56190	1757 bp upstream
Nnat	neuronatin	1682 bp downstream
Rr568544	regulatory region 568544	822 bp distal
Rr568545	regulatory region 568545	1328 bp proximal
Tssr721	transcription start site region 721	1747 bp upstream
Tssr21281	transcription start site region 21281	1986 bp downstream
Tssr21282	transcription start site region 21282	1913 bp downstream
Tssr21283	transcription start site region 21283	1884 bp downstream