rs242823473 SNP Detail

Summary

• ID
  rs242823473
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126575589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTACGCCC TCTGTGAAAT
  GCAAAATGCA GATTCCCTCT CAGGTCTCTT CTGCTGCTCC CTTTCCAGTT TCTTCCTTTG
  CGGCTGGCTC TCGAGTCTCT CCCCTCCCCT GTGCGTTGGT ACGAGCCGAA GCCTAGGGGC
  CCCGGCAGGA AAAGGAAGCA GGCCGGCCTT AAAGGGACCT CAGCCATTAT TTATTTAATT
  W
  ATTTATTTAT ATTTAAAAGC CGCTCTCTCC TTCTTCCGAT GTTCTTAACG TCCCGGACAG
  AAGAGTAGGC TCCAGAAGCC AGGCGCAGCG GAGCTGCGGA GCCCGCTGCT GGAGACGTCA
  GCTCCTGCCC ATCGGAAGGC CAGGTGTGCG TGAGCTGTGC CCAGGGGTGT CCCGCACCCC
  GGCGCCCTGC GGGCTCTAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373078378	MGP_WTSI_7_134119931	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242823473					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373078378	MGP_WTSI_7_134119931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126575589 () rs orientation: forward

Symbol	Name	Function Class
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	mRNA-UTR
Cdiptos	CDIP transferase, opposite strand	14 bp upstream
Cpgi19724	CpG island 19724	within coordinates
Gm73941	predicted gene, 73941	1379 bp downstream
Rr368439	regulatory region 368439	108 bp downstream
Rr655656	regulatory region 655656	640 bp distal
Rr655657	regulatory region 655657	within coordinates
Tssr2401	transcription start site region 2401	163 bp upstream
Tssr69141	transcription start site region 69141	793 bp downstream
Tssr69142	transcription start site region 69142	120 bp downstream
Tssr69143	transcription start site region 69143	17 bp downstream
Tssr69144	transcription start site region 69144	within coordinates
Tssr69145	transcription start site region 69145	15 bp upstream
Tssr69146	transcription start site region 69146	107 bp upstream
Tssr69147	transcription start site region 69147	130 bp upstream
Tssr69148	transcription start site region 69148	193 bp upstream
Tssr74865	transcription start site region 74865	1001 bp upstream
Tssr74866	transcription start site region 74866	574 bp upstream
Tssr74867	transcription start site region 74867	570 bp upstream
Tssr74868	transcription start site region 74868	312 bp upstream
Tssr74869	transcription start site region 74869	286 bp upstream
Tssr74870	transcription start site region 74870	275 bp upstream