rs242830590 SNP Detail

Summary

• ID
  rs242830590
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101899217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGGAGC TCGCGCTGTC
  CCTCGGATCC CACCCTCAAC CCGGCCACCA GCGATCGGGT CGCGGTGGCC GCTGTCCCCG
  CCCGGCCTGC CGCGCCCGCC CAACTTGCAG TGAACGAAAA CCTCCCGCCC TCGGCCTCCC
  TCCTGCAAAC TTCCCGGCTC CCGGGTACCC AGTCCGGGCC AGCTTGAACT CCTCTTCCCA
  R
  GACCCCTGCC CGACGGGCTC GACCCGGGCC TCACCTGGTG CCCTCCCCGC GGCGGGGGAG
  CTGGGGGCGG CGGCGGCGGC TCTGGGCTCA AGAAGGAAGT GAGAACTGGA GGCCGGAGGA
  AGTGGGGGGG TGGGGGCCGG GCCGGCAGGG CCGGGGCGGG GCGCGGGGGC GGGCCGGCCG
  GGGCGGGGCG GACTAGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353654	CHEV_7_109398524	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242830590					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101899217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	within coordinates
Rhog	ras homolog family member G	within coordinates
Rr652562	regulatory region 652562	within coordinates
Rr652563	regulatory region 652563	68 bp proximal
Rr652564	regulatory region 652564	911 bp proximal
Tssr2354	transcription start site region 2354	249 bp upstream
Tssr68328	transcription start site region 68328	317 bp downstream
Tssr68329	transcription start site region 68329	296 bp downstream
Tssr68330	transcription start site region 68330	210 bp upstream
Tssr73939	transcription start site region 73939	636 bp upstream
Tssr73940	transcription start site region 73940	589 bp upstream
Tssr73941	transcription start site region 73941	536 bp upstream
Tssr73942	transcription start site region 73942	451 bp upstream
Tssr73943	transcription start site region 73943	65 bp downstream
Tssr73944	transcription start site region 73944	76 bp downstream
Tssr73945	transcription start site region 73945	117 bp downstream
Tssr73946	transcription start site region 73946	313 bp downstream
Tssr73947	transcription start site region 73947	456 bp downstream
Tssr73948	transcription start site region 73948	481 bp downstream
Tssr73949	transcription start site region 73949	517 bp downstream
Tssr73950	transcription start site region 73950	566 bp downstream